I had been thinking about the parsing code I initially written for TodoClj I remembered that I had initially set out to mimics Todo.txt, so I have reoriented and now I am parsing the same format accepted by Todo.txt.
File /home/josh/code/octopress/source/downloads/code/Clojure/coreV2.clj could not be found
I feel that I am getting more and more comfortable with using clojure. I have stopped using Eclipse and instead use Sublime Text 2 and the REPL provided by lein for my project.